REVIEW ARTICLE - Biomonitoring of aquatic pollution: status and trends from genomics to populations

Olanike K. Adeyemo, Temitope O. Shogbanmu, Selim A. Alarape, Namcy D. Denslow

Abstract

Biomonitoring offers an appealing tool for the assessment of pollution in aquatic ecosystem. Biological processes, species, or communities of bioindicators are used to assess the quality of the environment and how it changes over time. Bioindicators include algae, macrophytes, zooplanktons, insects, bivalves, molluscs, gastropods, fish, amphibians, and others. Changes in aquatic ecosystems are often attributed to anthropogenic disturbances, including pollution. Major contributors to aquatic pollution include wastewater, metals and metalloids, industrial effluents, contaminated sediments, nutrients, polycyclic aromatic hydrocarbons, flame retardants, persistent organic pollutants, pharmaceuticals and illicit drugs, emerging contaminants (such as microplastics and engineered nanoparticles), pesticides, herbicides, and endocrine disruptors. In this review, we discuss categories of aquatic pollutants, status and trends of aquatic biomonitoring and approaches, from genomics to populations. We conclude by offering recommendations for research and regulatory testing.

Keywords

Bioindicators, Pollution, Biomonitoring, Ecotoxicological tools

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References

Adeogun, A O, Ibor O R, Chukwuka A V, Regoli F, and Arukwe A 2019. The intersex phenomenon in Sarotherodon melanotheron from Lagos lagoon (Nigeria): occurrence and severity in relation to contaminants burden in sediment. Environmental Pollution, 244, 747-756.

Adeyemo O K 2003. Consequences of pollution and degradation of Nigerian aquatic environment on fisheries resources. Environmentalist, 23(4), pp.297-306.

Adeyemo O K 2007a. Lead levels in rivers, sediments and fishponds in the Ibadan metropolitan area, south-west Nigeria. African Journal of Aquatic Science, 32(2), pp.153-157.

Adeyemo O K 2007b. Haematological profile of Clariasgariepinus (Burchell, 1822) exposed to lead. Turkish Journal of Fisheries and Aquatic Sciences, 7(2), pp.163-169.

Adeyemo O K, Akano O F, Emikpe B O 2011a. Effect of formalin on spawning success and organ histology in Clarias gariepinus, Research Journal of Environmental Toxicology 5(7):1-9.

Adeyemo O K, Alarape S A and Emikpe B O, 2011b. Reprotoxic effect of malachite green on African Catfish Clarias gariepinus (Burchell 1822), Journal of Fisheries and Aquatic Science, 6 (5): 1-8.

Adeyemo O K, Kroll K J and Denslow N D 2015. Developmental abnormalities and differential expression of genes induced in oil and dispersant exposed Menidiaberyllina embryos. Aquatic Toxicology, 168, pp.60-71.

Aina O O, Ozegbe P C, and Adeyemo O K 2019. Age related Histology and Immunohistochemistry of some intermediate filaments in the Testis of the African Catfish (Clarias gariepinus). Nigerian Journal of Physiological Sciences: Official Publication of the Physiological Society of Nigeria, 34(2), pp.121-124.

Akpan S O, Odeniyi O A, Adebowale O O, Alarape S A, and Adeyemo O K 2020. Antibiotic resistance profile of gram-negative bacteria isolated from Lafenwa abattoir effluent and its receiving water (River Ogun) in Abeokuta, Ogun State. Onderstepoort Journal of Veterinary Research (in press.)

Alarape S A, Ajani F, Adeyemo O K and Shobiye J O 2013. Effect of copper sulphate on spawning success in African Catfish (Clarias gariepinus, Burchell 1822), Journal of Fisheries and Aquatic Science, 8 (6), 714-720.

Amaeze N H, Egonmwan R I, Jolaoso A F, and Otitoloju A A 2012. Coastal environmental pollution and fish species diversity in Lagos lagoon, Nigeria. International Journal of Environmental Protection, 2(11), 8-16.

Ankley G T, Daston G P, Degitz S J, Denslow N D, Hoke R A, Kennedy S W, Miracle A L, Perkins E J, Snape J, Tillitt D E, and Tyler C R, 2006. Toxicogenomics in regulatory ecotoxicology. Environmental Science and Technology, 40(13), 4055-4065.

Ankley G T, Bennett R S, Erickson R J, Hoff D J, Hornung M W, Johnson R D, Mount D R, Nichols J W, Russom C L, Schmieder P K, and Serrrano J A, 2010. Adverse outcome pathways: a conceptual framework to support ecotoxicology research and risk assessment. Environmental Toxicology and Chemistry: An International Journal, 29(3), pp.730-741.

Badejo A, Adeyemo O K, and Ojo S O 2010. Seasonal levels of essential metals in fresh and fried marine shrimp and fishes from Lagos lagoon, Nigeria. International Journal of Environmental Sciences, 1(4), pp.454-461.

Baldigo B P, George S D, Phillips P J, Hemming J D, Denslow N D, and Kroll K J, 2015. Potential estrogenic effects of wastewaters on gene expression in Pimephales promelas and fish assemblages in streams of southeastern New York. Environmental toxicology and chemistry, 34(12), pp.2803-2815.

Bawa-Allah K A, Saliu J K, and Otitoloju A A 2018. Heavy metal pollution monitoring in vulnerable ecosystems. A case study of the Lagos lagoon, Nigeria. Bulletin of Environmental Contamination and Toxicology, 100(5), 609-613.

Benson N U, Adedapo A E, Fred-Ahmadu O H, Williams A B, Udosen E D, Ayejuyo O O, and Olajire A A 2018. New ecological risk indices for evaluating heavy metals contamination in aquatic sediment: a case study of the Gulf of Guinea. Regional Studies in Marine Science, 18, 44-56.

Carrigg C, Rice O, Kavanagh S, Collins G, and O’Flaherty V, 2007. DNA extraction method affects microbial community profiles from soils and sediment. Applied Microbiology and Biotechnology, 77(4), pp.955-964.

Carter M Q, Xue K, Brandl M T, Liu F, Wu L, Louie J W, Mandrell R E, and Zhou J, 2012. Functional metagenomics of Escherichia coli O157: H7 interactions with spinach indigenous microorganisms during biofilm formation. PloS One, 7(9), p.e44186.

Davis J M, Ekman D R, Skelton D M, LaLone C A, Ankley G T, Cavallin J E, Villeneuve D L, and Collette T W, 2017. Metabolomics for informing adverse outcome pathways: androgen receptor activation and the pharmaceutical spironolactone. Aquatic Toxicology, 184, pp.103-115.

Deiner K, Bik H M, Mächler E, Seymour M, Lacoursière‐Roussel A, Altermatt F, Creer S, Bista I, Lodge D M, De Vere N, and Pfrender M E, 2017. Environmental DNA metabarcoding: Transforming how we survey animal and plant communities. Molecular ecology, 26(21), pp.5872-5895.

Denslow N D, Griffitt R J, Martyniuk C J. 2012. Advancing the Omics in aquatic toxicology: SETAC North America 31st Annual Meeting. Ecotoxicology and Environmental Safety, 76(2), 1-2.

Dole‐Olivier M J, Castellarini F, Coineau N, Galassi D M P, Martin P, Mori N, Valdecasas A, and Gibert J, 2009. Towards an optimal sampling strategy to assess groundwater biodiversity: comparison across six European regions. Freshwater Biology, 54(4), pp.777-796.

Edegbene A O, Elakhame L A, Arimoro F O, Osimen E C and Odume O N 2019. Development of macroinvertebrate multimetric index for ecological evaluation of a river in North Central Nigeria. Environmental Monitoring and Assessment, 191(5), 274.

Ellwood M D and Foster W A, 2004. Doubling the estimate of invertebrate biomass in a rainforest canopy. Nature, 429(6991), pp.549-551.

Fatta-Kassinos D K, Kümmerer, Pharmaceuticals in the environment: sources, fate, effects and risks. 2010. Environmental Science and Pollution Research, 17, 519–521.

Folmar L C, Denslow N D, Rao V, Chow M, Crain D A, Enblom J, Marcino J, and Guillette Jr L J, 1996. Vitellogenin induction and reduced serum testosterone concentrations in feral male carp (Cyprinus carpio) captured near a major metropolitan sewage treatment plant. Environmental Health Perspectives, 104(10), pp.1096-1101.

Garcia G D, Gregoracci G B, Santos E D O, Meirelles P M, Silva G G, Edwards R, Sawabe T, Gotoh K, Nakamura S, Iida T, and de Moura R L, 2013. Metagenomic analysis of healthy and white plague affected Mussismiliabraziliensis corals. Microbial Ecology, 65(4), pp.1076-1086.

González A, Clemente J C, Shade A, Metcalf J L, Song S, Prithiviraj B, Palmer B E, and Knight R 2011. Our microbial selves: what ecology can teach us. EMBO Reports, 12(8), pp.775-784.

González A, Kroll K J, Silva-Sanchez C, Carriquiriborde P, Fernandino J I, Denslow N D, and Somoza G M, 2020. Steroid hormones and estrogenic activity in the wastewater outfall and receiving waters of the Chascomús chained shallow lakes system (Argentina). Science of The Total Environment, p.140401.

Griffitt R J, Denslow N D, and Martyniuk C J, 2012. Advancing the Omics in Aquatic Toxicology: SETAC North America 31st Annual Meeting. Ecotoxicology and Environmental Safety, 76(2), 1-2.

Gurtz M E 1994. Design of biological components of the National Water-Quality Assessment (NAWQA) program, chap. 15 of Loeb, SL, and Spacie, Anne, eds., Biological monitoring of aquatic systems: Boca Raton, Fla.

Hoffmann A A and Sgro C M 2011. Climate change and evolutionary adaptation. Nature, 470(7335), pp.479-485.

Ibor O R, Adeogun A O, Fagbohun O A, and Arukwe A 2016. Gonado-histopathological changes, intersex and endocrine disruptor responses in relation to contaminant burden in Tilapia species from Ogun River, Nigeria. Chemosphere, 164, 248-262.

Kupoluyi A Y, Alarape S A, and Adeyemo O K 2018. Impact of industrial effluents on Alaro River in Oluyole Industrial Estate, Ibadan and its suitability for aquatic life. Sokoto Journal of Veterinary Sciences, 16(1): 38-44.

Leopold M A and Dreier D A 2019. Ecotoxicological risk assessment of endocrine disruptors: current and future approaches in Elsevier Reference Collection in Earth Systems and Environmental Sciences

Liu J L and Wong M H 2013. Pharmaceuticals and personal care products (PPCPs): a review on environmental contamination in China. Environment international, 59, pp.208-224.

Martyniuk C J, Alvarez S, McClung S, Villeneuve D L, Ankley G T, and Denslow N D 2009. Quantitative proteomic profiles of androgen receptor signaling in the liver of fathead minnows (Pimephales promelas). Journal of Proteome Research, 8(5), pp.2186-2200.

Martyniuk C J and Denslow N D 2012. Exploring androgen-regulated pathways in teleost fish using transcriptomics and proteomics. Integrative and Comparative Biology, 52(5):695-704.

Martyniuk C J, Doperalski N J, Prucha M S, Zhang J L, Kroll K J, Conrow R, Barber D S, and Denslow N D 2016. High contaminant loads in Lake Apopka's riparian wetland disrupt gene networks involved in reproduction and immune function in largemouth bass. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 19, pp.140-150.

Marx C J 2013. Can you sequence ecology? Metagenomics of adaptive diversification. PLoS Biol, 11(2), p.e1001487.

Mehinto A C, Kroll K J, Jayasinghe B S, Lavelle C M, Van Dervort D, Adeyemo O K, Bay S M, Maruya K A, and Denslow N D 2018. Linking in vitro estrogenicity to adverse effects in the inland silverside (Menidia beryllina). Environmental Toxicology and Chemistry, 37(3), pp.884-892.

Mizrahi-Man O, Davenport E R and Gilad Y 2013. Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs. PloS One, 8(1), p.e 53608.

Nwabueze C J, Sogbanmu T O, and Ugwumba A A A 2020. Physicochemical characteristics, animal species diversity and oxidative stress responses in dominant fish from an impacted site on the Lagos Lagoon, Nigeria. Ife Journal of Science, 22(2), 81-93.

Nwaichi E O and Ntorgbo S A 2016. Assessment of PAHs levels in some fish and seafood from different coastal waters in the Niger Delta. Toxicology Reports 3, 167-172.

Ola-Davies O E, Fagbohun A F, Emikpe B O, and Adeyemo O K 2015. Diazinon-induced clastogenity and pathological changes in ovaries and testes of Clarias gariepinus. Agricultural Sciences, 6(01), p.146.

Olaniran E I, Sogbanmu T O, and Saliu J K 2019. Biomonitoring, physico-chemical and biomarker evaluations of abattoir effluent discharges into the Ogun River from Kara Market, Ogun State, Nigeria using Clarias gariepinus. Environmental Monitoring and Assessment, 191, 44.

Omenka S S and Adeyi A A 2016. Heavy metal content of selected personal care products (PCPs) available in Ibadan, Nigeria and their toxic effects. Toxicology Reports, 3, pp.628-635.

Qian X, Ba Y, Zhuang Q, and Zhong G 2014. RNA-Seq technology and its application in fish transcriptomics. Omics: A Journal of Integrative Biology, 18(2), pp.98-110.

Rainbow P S 1995. Biomonitoring of heavy metal availability in the marine environment. Marine Pollution Bulletin, 31(4-12), pp.183-192.

Reddy P B and Rawat S S 2013. Assessment of aquatic pollution using histopathology in fish as a protocol. International Research Journal of Environment Sciences, 2(8), pp.79-82.

Saka B A, Adeyemo O K, and Odeseye A O 2017. Multiple antibiotic resistance indices of Aeromonas hydrophila isolates of muscle of catfish (Clarias gariepinus, Burchell 1822) from selected markets in Ibadan, Nigeria. African Journal of Clinical and Experimental Microbiology, 18(2), pp.73-78.

Schmeller D S, Loyau A, Bao K, Brack W, Chatzinotas A, De Vleeschouwer F, Friesen J, Gandois L, Hansson S V, Haver M, and Le Roux G 2018. People, pollution and pathogens–Global change impacts in mountain freshwater ecosystems. Science of the Total Environment, 622, pp.756-763.

Smith M T, de la Rosa R, and Daniels S I 2015. Using exposomics to assess cumulative risks and promote health. Environmental and Molecular Mutagenesis, 56(9), pp.715-723.

Sogbanmu T O and Otitoloju A A 2014. Joint action toxicity and biochemical effects of binary mixtures of Forcados light crude oil and three dispersants against Clarias gariepinus. International Journal of Environmental Research, 8(2), 395-402.

Sogbanmu T O, Nagy E, Phillips D H, Arlt V M, Otitoloju A A, and Bury N R 2016. Lagos lagoon sediment organic extracts and polycyclic aromatic hydrocarbons induce embryotoxic, teratogenic and genotoxic effects in Danio rerio (zebrafish) embryos. Environmental Science and Pollution Research, 23(14), 14489-501.

Sogbanmu T O, Osibona A O, Oguntunde A O, and Otitoloju A A 2018. Biomarkers of toxicity in Clarias gariepinus exposed to sub lethal concentrations of polycyclic aromatic hydrocarbons. African Journal of Aquatic Science, 43(3), 281-292.

Sogbanmu T O, Osibona A O, and Otitoloju A A 2019. Specific polycyclic aromatic hydrocarbons identified as ecological risk factors in the Lagos lagoon, Nigeria. Environmental Pollution 255, 113295.

Sogbanmu T O, Fatunsin O T, Echebiri F O, Otitoloju A A, and Olayinka K O 2020. Sawmill activities near the Lagos lagoon, Nigeria: Polycyclic aromatic hydrocarbons analysis and embryotoxic evaluations of sediment extracts using Clarias gariepinus. Bulletin of Environmental Contamination and Toxicology 104(6), 809-819.

Thomas T, Gilbert J, and Meyer F 2012. Metagenomics-a guide from sampling to data analysis. Microbial informatics and experimentation, 2(1), p.3.

Unterseher M, Jumpponen A R I, Oepik M, Tedersoo L, Moora M, Dormann C F, and Schnittler, M 2011. Species abundance distributions and richness estimations in fungal metagenomics–lessons learned from community ecology. Molecular Ecology, 20(2), pp.275-285.

Vidal-Dorsch D E, Bay S M, Maruya K, Snyder S A, Trenholm R A, and Vanderford B J 2012. Contaminants of emerging concern in municipal wastewater effluents and marine receiving water. Environ Toxicol Chem 31:2674–2682

Wang J F, Stein A, Gao B B, and Ge Y 2012. A review of spatial sampling. Spatial Statistics, 2, pp.1-14.

Wang J F, Jiang C S, Hu M G, Cao Z D, Guo Y S, Li L F, Liu T J, and Meng B 2013a. Design-based spatial sampling: Theory and implementation. Environmental Modelling and Software, 40, pp.280-288.

Wang J, McLenachan P A, Biggs P J, Winder L H, Schoenfeld B I, Narayan V V, Phiri B J, and Lockhart P J, 2013b. Environmental biomonitoring with high-throughput sequencing. Briefings in Bioinformatics, 14(5), pp.575-588.

Whittaker R H 1960. Vegetation of the Siskiyou mountains, Oregon and California. Ecological Monographs, 30(3), pp.279-338.

Wooley J C, Godzik A, and Friedberg I 2010. A primer on metagenomics. PLoS Computational Biology, 6(2), p. e1000667.

Yates J R, Ruse C I, and Nakorchevsky A 2009. Proteomics by mass spectrometry: approaches, advances, and applications. Annual Review of Biomedical Engineering, 11, pp.49-79.

Yoon Y, Ryu J, Oh J, Choi B G, Snyder S A 2010. Occurrence of endocrine disrupting compounds, pharmaceuticals, and personal care products in the Han River (Seoul, South Korea). Science of the Total Environment 408, 636-643.

Zolfaghari-Baghbaderani A, Emtyazjoo M, Poursafa P, Mehrabian S, Bijani S, Farkhani D, and Mirmoghtadaee P 2012. Effects of three types of oil dispersants on biodegradation of dispersed crude oil in water surrounding two Persian Gulf provinces. Journal of Environmental and Public Health Article ID 981365, 8 pages.

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